2012

Young, N.D.; Jex, A.R.; Li, B.; Liu, S.; Yang, L.; Xiong, Z.; Li, Y.; Cantacessi, C.; Hall, R.S.; Xu, X.; Chen, F.; Wu, X.; Zerlotini, A.; Oliveira, G.; Hofman, A.; Zhang, G.; Fang, X.; Kang, Y.; Campbell, B.E.; Loukas, A.; Ranganathan, S.; Rollinson, D.; Rinaldi, G.; Brindley, P.; Yang, H.; Wang, J.; Wang, J.; Gasser, R.B. The Schistosoma haematobium genome – in response to the wake-up call. Nature Genetics 2012, 44:221-225. PDF

Protasio, A.V.; Tsai, I.J.; Babbage, A.; Nichol, S.; Hunt, M.; Aslett, M.A.; De Silva, N.; Velarde, G.S.; Anderson, T.J.C.; Clark, R.C.; Davidson, C.; Dillon, G.P; Holroyd, N.E.; LoVerde, P.T.; Lloyd, C.; McQuillan, J.; Oliveira, G.; Otto, T.D.; Parker-Manuel, S. J.; Quail, M.A.; Wilson, R.A.; Zerlotini, A.; Dunne, D. W.; Berriman, M. A Systematically Improved High Quality Genome and Transcriptome of the Human Blood Fluke Schistosoma mansoni. PLoS Neglected Tropical Diseases, 2012, 6(1): e1455. PDF

2011

Young, N.D.; Jex, A.R.; Li, B.; Liu, S.; Yang, L.; Xiong, Z.; Li, Y.; Cantacessi, C.; Hall, R.S.; Xu, X.; Chen, F.; Wu, X.; Zerlotini, A.; Oliveira, G.; Hofman, A.; Zhang, G.; Fang, X.; Kang, Y.; Campbell, B.E.; Loukas, A.; Ranganathan, S.; Rollinson, D.; Rinaldi, G.; Brindley, P.; Yang, H.; Wang, J.; Wang, J.; Gasser, R.B. The Schistosoma haematobium genome – in response to the wake-up call. Nature Genetics 2011. Aceito.

Santos. A.R.; Santos, M.A.; Baumbach, J.; McCulloch, J.A.; Oliveira, G.C.; Silva, A.; Miyoshi, A.; Azevedo. A. A singular value decomposition approach for improved taxonomic classification of biological sequences. BMC Genomics 2011, 12(Suppl 4):S11. PDF

Andrade, .L., Nahum, L.A., Avelar, L.G.A., Silva, L.L., Zerlotini, A., Ruiz, J.C., Oliveira, G. Eukaryotic Protein Kinases (ePKs) of the Helminth Parasite Schistosoma mansoni.  2011. BMC Genomics 12:215. PDF

Avelar, L.G.A., Nahum, L.A., Andrade, L.F., Oliveira, G. Functional diversity of the Schistosoma mansoni tyrosine Kinases. 2011. Journal of Signal Transduction. Volume 2011, 1-11. PDF

Silva, L.L., Marcet-Houben, M., Zerlotini, A., Gabaldón, T., Oliveira, G., Nahum, L.A. Evolutionary history of expanded peptidase families in Schistosoma mansoni. 2011. Memórias do Instituto Oswaldo Cruz. 106(7): 864-877. PDF Suppl. material.

Ruiz, J.C., D'Afonseca, V., Silva, A., Ali, A., Pinto, A.C., Santos, A.R., Rocha, A.A.M.C., Lopes, D.O., Dorella, F.A., Pacheco, L.G.C., Costa, M.P., Turk, M.Z., Seyffert, N., Moraes, P.M.R.O, Soares, S.C., Almeida, S.S., Castro, T.L.P., Abreu, V.A.C., Trost, E., Baumbach, J., Tauch, A., McCulloch, J., Cerdeira, L.T., Ramos, R.T.J., Zerlotini, A., Dominitini, A., Resende, D.M., Coser, E.M., Oliveira, L.M., Pedrosa, A.L., Vieira, C.U., Guimarães, C.T., Bartholomeu, D.C., Oliveira, D.M., Santos, F.R., Rabelo, E.M., Lobo, F.P., Franco, G.R., Costa, A.F., Castro, I.M., Dias, S.R.C., Ferro, J.A., Ortega, J.M., Paiva, L.V., Goulart, L.R., Almeida, J.F., Ferro, M.I.T., Carneiro, N.P., Falcão, P.R.K., Grynberg, P., Teixeira, S.M.R., Brommonschenkel, S., Oliveira, S.C., Meyer, R., Moore, R., Miyoshi, A., Oliveira, G.C., Azevedo, V. Evidences for Reductive Genome Evolution and Lateral Acquisition of Virulence Functions in two Corynebacterium pseudotuberculosis strains. PLoS One. 2011; 6(4): e18551. PDF

Simões, M.C., Lee, J., Djikeng, A., Cerqueira, G.C., Zerlotini, A., Silva-Pereira, R.A., Dalby, A.R., LoVerde, P., El-Sayed, N.M., Oliveira, G.  Identification of Schistosoma mansoni microRNAs.  BMC Genomics.  2011. 12-47.  PDF

Machado, M., Magalhães, W.C.S., Sene, A., Araújo, B., Faria-Campos, A.C., Chanock, S.J., Scott, L., Oliveira, G., Tarazona-Santos, E., Rodrigues, M.R. Phred-Phrap package to analyses tools: a pipeline to facilitate population genetics re-sequencing studies.  Investigative Genetics.  2011.  2:3. PDF

2010

Coimbra, R.S., Vanderwall, D.E., Oliveira, G. Disclosing ambiguous gene aliases by automatic literature profiling. BMC Genomics. 2010. 11(Suppl 5):S3.

Webster, J., Oliveira, G., Rollinson, D., Gower, C.M. Schistosome genomes: a wealth of information. Trends in Parasitology. 2010. 26:103-106.

Zerlotini, A.; Oliveira, G. The contributions of the genome project for the study of schistosomiasis. Memórias do Instituto Oswaldo Cruz. 2010. 105(4):367-369.

Coimbra, R.S., Artiguenave, F., Jacques, L.S.R.Z., Oliveira, G. MST (Molecular Serotyping Tool): a program for computer-assisted molecular identification of Escherichia coli and Shigella O-antigens. Journal of Clinical Microbiology. 2010. 48(5):1921-1923.